Publications

2008

• Probing DNA base pairing energy profiles using a nanopore.
  V.Viasnoff, N.Chiaruttini and U. Bockelmann
  Europ.Biophys.J 38 (2) 263-269 2009 (online pub oct 08). PDF
• Interference and crosstalk in double optical tweezers using a single laser source
  P. Mangeol and U. Bockelmann
  Rev. Sci. Instrum. 79, 083103 (2008). PDF
• T7 RNA Polymerase Studied by Force Measurements Varying Cofactor Concentration
  P. Thomen, P. J. Lopez, U. Bockelmann, J. Guillerez, M. Dreyfus and F. Heslot
  Biophys. J. 95, 2423 (2008).
• Theoretical study of sequence dependent nanopore unzipping of DNA
  U. Bockelmann and V. Viasnoff
  Biophys. J. 94, 2716 (2008).

2007

• Electronic detection of DNA adsorption and hybridization
  U. Bockelmann
  in IFIP International Federation for Information Processing, Vol. 249, VLSI-SoC: Research Trends in VLSI and Systems on Chip, eds. G. de Micheli, S. Mir, R. Reis, pp.55-67 (Boston: Springer 2007)
• Signal enhancement in electronic detection of DNA hybridization
  C. Gentil, G. Philippin and U. Bockelmann
  Phys. Rev. E 75, 011926 (2007)

2006

• Transistor based study of the electrolyte/SiO2 interface
  C. Gentil, D. Côte and U. Bockelmann
  Phys. Stat. Sol. A 164, 281 (2006)
• Single molecule study of DNA conductivity in aqueous environment
  O. Legrand , D. Côte and U. Bockelmann
  Phys. Rev. E 73, 031925 (2006)
• Probing DNA and RNA single molecules with a double optical tweezer
  P. Mangeol, D. Côte, T. Bizebard, O. Legrand and U. Bockelmann
  Eur. Phys. J. E 19, 311 (2006)

2005

• Procédé de détection électronique d'au moins une interaction spécifique entre des molécules sondes et des biomolécules cibles
  U. Bockelmann, F. Pouthas, C. Gentil, EP03813618 (2005), patent
• DNA nanomechanical switches under folding kinetics control
  V.Viasnoff, A.Meller, H.Isambert, Nano Lett. 2006 Jan;6(1):101-4.

2004

• Dynamics of the DNA duplex formation studied by single molecule force measurements
  U.Bockelmann, P. Thomen and F. Heslot
  Biophysical Journal 87, 3388 (2004)
• Spatially resolved electronic detection of biopolymers
  F. Pouthas, C. Gentil, D. Côte, G. Zeck, B. Straub and U. Bockelmann
  Phys. Rev. E, 70, 031906 (2004)
• DNA detection on transistor arrays following mutation-specific enzymatic amplification
  F. Pouthas, C. Gentil, D. Côte and U. Bockelmann
  Appl. Phys. Lett. 84, 1594 (2004)
• A double trap for single molecule manipulation at opaque and microstructured surfaces
  O. Legrand, D. Côte and U. Bockelmann
  "Optical Trapping and Optical Micromanipulation", edited by K. Dholakia and G. C. Spalding, Proceedings of SPIE Vol. 5514, p.160 (2004)
• Single molecule manipulation of nucleic acids
  U. Bockelmann
  Curr. Opin. Struct. Biol. 14, 368 (2004)
  

2003

• Detection of molecular probes fixed to an active zone of a sensor
  U. Bockelmann, F. Pouthas, PCT WO03062811 (2003), patent

2002

• Rotational drag on DNA: a single molecule experiment
  P. Thomen, U. Bockelmann and F. Heslot
  Phys. Rev. Lett. 88, 248102 (2002)
• Mechanical opening of DNA by micromanipulation and force measurement
  U. Bockelmann, B. Essevaz-Roulet, Ph. Thomen and F. Heslot
  C. R. Physique 3, 585 (2002)
• Unzipping DNA with Optical Tweezers: High Sequence Sensitivity and Force Flips
  U. Bockelmann, Ph. Thomen, B. Essevaz-Roulet, V. Viasnoff and F. Heslot
  Biophys. J. 82, 1537 (2002)

---

Conferences

• Force measurements on the interaction between RNA and a ribosomal protein
  436th WE Hereaus Seminar "Biosensing with channels", Bremen, (Germany), 2009 (invited)
• Interference and crosstalk in double optical tweezers using a single laser source
  Single Molecule Biophysics Winter Workshop, Aspen, (USA), 2009 (oral)
• Signal enhancement in transistor based detection of DNA hybridization
  4th Conference From Solid State to Biophysics, Cavtat, (Croatia), 2008 (invited)
• Base sequence effects in nanopore unzipping of DNA
  52nd Annual Meeting of the Biophysical Society, Long Beach, (USA), 2008, (poster)
• Single molecule studies and electronic detection of DNA
  Symposium on New directions in biophysics and complex systems, Gttingen, (Germany), 2007 (invited)
• Theoretical study of sequence dependent nanopore unzipping of DNA
  6th European Biophysics Congress, London (UK), 2007 (poster)
• Theoretical study of sequence dependent nanopore unzipping of DNA
  International Summerschool on Channels, chips and nanopores, Ile de Berder (France) 2007 (invited)
• Using optical trapping and semiconductor structures for DNA science
  Symposium on Frontiers in Semiconcutor Nanoscience, Mnchen, (Germany), 2006 (invited)
• Detecting DNA by field effect transistor arrays
  14th International Conference on Very Large Scale Integration, Nice, (France), 2006 (invited)
• Transistor arrays for electronic detection of DNA adsorption and hybridization
  Summer school on Biosensing with channels, Bremen, (Germany), 2006 (invited)
• Single molecule manipulation of DNA: about sequences, springs and electrons
  Symposium on Perspectives in Physics of Biological and Non-linear Systems, Gttingen, (Germany), 2006 (invited)
• Single molecule study of DNA conductivity
  50th Annual Meeting of the Biophysical Society, Salt Lake City, (USA), 2006, (poster)
• Single molecule study of DNA conductivity and transistor based hybridization detection
  Indo-french symposium on nanotechnology, Goa (Inde), 2006 (invited)
• DNA detection on Transistor Arrays Following Mutation Specific Enzymatic Amplification
  9th European conference on "Micro&Nanoscale Technologies for the Biosciences", Montreux (Switzerland), 2005 (invited)
• Absence of electrical conductivity in optically trapped single DNA
  ECME8, Bologna, (Italy), 2005, (poster)
• A double trap for single molecule manipulation at opaque and microstructured surfaces
  Conference on "Optical Trapping and optical micromanipulation",
  SPIE's 49th Annual Meeting,Denver (USA), 2004, (oral) 
• DNA detection on transistor arrays
  Workshop on "Electronic Recognition of DNA molecules", Liège (Belgium), 2004 (invited)
• A double trap for single molecule manipulation at opaque and microstructured surfaces
  Conference on "Optical Trapping and optical micromanipulation",
  SPIE's 49th Annual Meeting,Denver (USA), 2004, (oral) 
• Nano-Bio-Physics: some current topics and perspectives
  CNRS meeting on "Dynamics and Reactivity of biological assemblies",
  Dinard (France), 2004 (invited)
• Single molecule manipulation and electronic detection of DNA
  Workshop on "Molecular Motors", Bad Honnef (Germany), 2004 (invited)
  
• Electronic detection of DNA
  ForumLABO&ForumBIOTECH, Paris-la Defense (France), 2004 (invited)
  
• Electronic detection of DNA on transistor arrays
  Spring Meeting of the German Physical Society Regensburg (Germany), 2004 (invited)
  
• Exploring energy landscapes and structural fluctuations by force measurements:
  the example of DNA
  4th European Biophysics Congress, Alicante (Spain), 2003 (invited)
  
• Electronic detection of DNA by field effect on transistor arrays
  4th European Biophysics Congress, Alicante (Spain), 2003 (poster)
  
• Electronic detection of oligonucleotide hybridization
  Bionanotechnology,EuroConference on Biomolecular Devices, Granada (Spain), 2003 (oral)